class Wgsim::Sequencing::Option

• Wgsim::Sequencing::Option
• Reference
• Object

Defined in:

wgsim/sequencing/option.cr

Constant Summary

DEFAULT_AVERAGE_DEPTH = 10.0

DEFAULT_ERROR_RATE = 0.01

DEFAULT_INSERT_SIZE_STD_DEV = 50

DEFAULT_MAX_AMBIGUOUS_RATIO = 0.05

DEFAULT_MEAN_INSERT_SIZE = 500

DEFAULT_READ1_LENGTH = 100

DEFAULT_READ2_LENGTH = 100

MAX_PROBABILITY = 1.0

MIN_PROBABILITY = 0.0

Instance Method Summary

• #average_depth : Float64
• #average_depth=(average_depth : Float64)
• #error_rate : Float64
• #error_rate=(error_rate : Float64)
• #insert_size_std_dev : Int32
• #insert_size_std_dev=(insert_size_std_dev : Int32)
• #max_ambiguous_ratio : Float64
• #max_ambiguous_ratio=(max_ambiguous_ratio : Float64)
• #mean_insert_size : Int32
• #mean_insert_size=(mean_insert_size : Int32)
• #read1_fastq : Path | Nil
• #read1_fastq=(read1_fastq : Path | Nil)
• #read1_length : Int32
• #read1_length=(read1_length : Int32)
• #read2_fastq : Path | Nil
• #read2_fastq=(read2_fastq : Path | Nil)
• #read2_length : Int32
• #read2_length=(read2_length : Int32)
• #reference : Path | Nil
• #reference=(reference : Path | Nil)
• #seed : UInt64 | Nil
• #seed=(seed : UInt64 | Nil)
• #summary
• #validate! : Nil

Instance Method Detail