class Wgsim::Mutate::Option

• Wgsim::Mutate::Option
• Reference
• Object

Defined in:

wgsim/mutate/option.cr

Constant Summary

DEFAULT_DELETION_EXTENSION_PROBABILITY = 0.3

DEFAULT_DELETION_RATE = 0.0001

DEFAULT_INSERTION_EXTENSION_PROBABILITY = 0.3

DEFAULT_INSERTION_RATE = 0.0001

DEFAULT_PLOIDY = 2_u8

DEFAULT_SUBSTITUTION_RATE = 0.001

MAX_PROBABILITY = 1.0

MIN_PROBABILITY = 0.0

Instance Method Summary

• #deletion_extension_probability : Float64
• #deletion_extension_probability=(deletion_extension_probability : Float64)
• #deletion_rate : Float64
• #deletion_rate=(deletion_rate : Float64)
• #insertion_extension_probability : Float64
• #insertion_extension_probability=(insertion_extension_probability : Float64)
• #insertion_rate : Float64
• #insertion_rate=(insertion_rate : Float64)
• #mutated_fasta : Path | Nil
• #mutated_fasta=(mutated_fasta : Path | Nil)
• #mutation_event_log : Path | Nil
• #mutation_event_log=(mutation_event_log : Path | Nil)
• #ploidy : UInt8
• #ploidy=(ploidy : UInt8)
• #reference : Path | Nil
• #reference=(reference : Path | Nil)
• #seed : UInt64 | Nil
• #seed=(seed : UInt64 | Nil)
• #substitution_rate : Float64
• #substitution_rate=(substitution_rate : Float64)
• #summary
• #validate! : Nil

Instance Method Detail